Hippophae rhamnoides Information Archive

Tea Plant Related Database

TMDB - Tea Metabolome Database

TBC2health - a database of experimentally validated health-beneficial effects of tea bioactive compounds

TBC2target - a resource of predicted target genes of tea bioactive compounds

Assam Tea Genome Database - a genomic database for Assam tea (Camellia sinensis var. assamica)

Plant Genome Databases

TAIR  (http://www.arabidopsis.org/index.jsp)

MaizeGDB (http://www.maizegdb.org/)

Medicago truncatula - A model for legume research (http://www.medicago.org/)

SoyBase and the Soybean Breeder's Toolbox (http://soybase.org/)

Rice genome database (http://rgp.dna.affrc.go.jp/)

Cucumber genome database (http://cucumber.genomics.org.cn/page/cucumber/index.jsp)

AppleGFDB (http://gfdb.sdau.edu.cn/)

Welcome to the Cacao Genome Project | Cacao Genome Database (http://www.cacaogenomedb.org/)

BRAD-Brassica Database (http://brassicadb.org/brad/)

B. oleracea Genome Database (http://ocri-genomics.org/bolbase)

Brassica.info (http://www.brassica.info/resource/databases.php)

AAFC Comparative Genome Viewer (http://brassica.agr.gc.ca/navigation/viewer_e.shtml)

Korea B. rapa genomics (http://www.brassica-rapa.org/BGP/NC_brgp.jsp)

Resource Databases

PlantGDB  (http://www.plantgdb.org/)

JGI (http://www.jgi.doe.gov/)

Phytozome (http://www.phytozome.net/)

Entrez Genome Database (http://www.ncbi.nlm.nih.gov/sites/genome)

DOGS-Database Of Genome Sizes (http://www.cbs.dtu.dk/databases/DOGS/)

PGDD - Plant Genome Duplication Database (http://chibba.agtec.uga.edu/duplication/)

MIPS (http://www.helmholtz-muenchen.de/en/ibis)

GRAMENE-Plant Genomic Resources (http://www.gramene.org/)

SGN - Sol Genomics Network (http://www.sgn.cornell.edu/)

Welcome to the Genome Database for Rosaceae | GDR (http://www.rosaceae.org/)

Genome

BGI-RISe - Beijing Genomics Institute Rice Information System.

RAP-DB - Rice Annotation Project Database.

MSU-RAP - The MSU Rice Genome Annotation Project Database and Resource.

MOsDB - A resource for publicly available sequences of the rice (Oryza sativa L.) genome.

Variation

IC4R Rice Variation Database - Collected almost all the public available re-sequenced rice accessions (5152), and identified about 18M SNPs.

RMD - Rice Mutant Database.

RiceVarMap - Rice Variation Map, SNPs and indels.

SNP-Seek - This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.).

Expression

RiceFREND - Rice Functionally Related gene Expression Network Database.

RED - An integrated RNA-Seq-derived gene expression database for rice.

MCDRP - An unique manually curated database based on published experimental data.

OryGenesDB - An integrated tool for Rice reverse genetics.

OrysPSSP - Small secreted proteins from rice. (temporarily unavailable)

RiceXPro - Rice transcriptome under natural conditions.

RicePLEX - MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.

CREP - Collection of Rice Expression Profiles.

Other

RetrOryza - The research community with the most complete resource on LTR-retrotransposon for rice.

RiceGeneThresher - A public online resource for mining genes underlying genome regionsof interest or quantitatie trait loci (QTLs) in the rice genome.

Oryza Tag Line - To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare).

DRTF - DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica.

IC4R - Information Commons for Rice.

RiceWiki - A wiki-based database for community curation of rice genes.

IRIS - International Rice Information System.

Oryzabase- A comprehensive rice science database.

Rice Pipeline - Unification tool for rice databases. (temporarily unavailable)

RPD - Rice proteome database.

RiceGAAS - Rice genome automated annotation system.

Rice TOGO Browser - A platform to retrieve integrated information on rice functional and applied genomics.

OryzaPG-DB - Rice Proteome Database based on Shotgun Proteogenomics.

2019 © Research Institute of Forestry, Chinese Academy of Forestry, No.1 Dong Xiaofu, Haidian District, Beijing 100091, China