Locus Search

Hippophae rhamnoides Information Archive

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TPIA Search Engine
All the search options listed below are used to systemtically search information within the Hippophae rhamnoides information archive (HRIA).

Basic Searches

Quick Search:

(Use gene locus identifier to directly search its relative information in HRIA. Example:'Sph_LG10G0016'.)

Text Search:

(Use a keyword to simultaneously search information in TPIA. Examples: 'Theanine', 'MYB', 'PAL', 'Xia EH')

Advanced Searches

Step 2: Select gene feature (Required)

- Select one or more feature types

Single exon locus

Multi-exons locus

Step 3: Narrow results (Optional)

- Select search criteria to return specific types of genes. Results will match all selected criteria. - Select search criteria by clicking on a checkbox, filling in a dialog box, or selecting a menu option. - Select or unselect multiple options for Scaffolds and functional categories (GO terms, PFAM domain, Transcription factors, KEGG pathway) by pressing the Control (PC) or Command (Mac) key while clicking.

Sequence and expression properties:
Is a feature that is AND

Length > 100 aa

Uncharacterized

Highly expressed in AND

Is on the following Scaffold sequence(s): AND

(Select "All" scaffolds or specifically select each of the scaffold of interest rather than "All")

Gene Ontology (GO) annotation: AND

Is annotated to the following GO-Slim term(s): you will retrieve features annotated directly to the GO terms you select as well as any children of those GO terms.

Add additional GOIDs here(One ID per line)

Transcription factor (TF) and PFAM domain annotation: AND
Is annotated to the following TFs and PFAM domain(s):

Add PFAM accessions here(One acession per line)

Specialized Gene and Sequence Searches

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